I posted another minor update tonight.
Only links/views directly made to the post/article permalink are counted and displayed. The indexes on the new stats/referral tables are a little different than the rest of the site. I am still not sure if that is good or bad yet, but please let me know if you see a major slow down on the backend.
Also note, the AggCount column/feature has not been implemented yet, so for now, it will always be zero. More on this later :-)